11/07/2016

How A Single Word Sparked A Four-Year Saga Of Climate Fact-Checking And Blog Backlash

The Conversation - 

Re-analysed data shows that Australia has indeed been hotter over the past 30 years than any time in the preceding millennium. AAP Image/Dan Himbrechts
Journal of Climate, showing that temperatures recorded in Australasia since 1950 were warmer than at any time in the past 1,000 years.
Following the early online release of the paper, as the manuscript was being prepared for the journal's print edition, one of our team spotted a typo in the methods section of the manuscript.
While the paper said the study had used "detrended" data – temperature data from which the longer-term trends had been removed – the study had in fact used raw data. When we checked the computer code, the DETREND command said "FALSE" when it should have said "TRUE".
Both raw and detrended data have been used in similar studies, and both are scientifically justifiable approaches. The issue for our team was the fact that what was written in the paper did not match what was actually done in the analysis – an innocent mistake, but a mistake nonetheless.
Instead of taking the easy way out and just correcting the single word in the page proof, we asked the publisher to put our paper on hold and remove the online version while we assessed the influence that the different method had on the results.

Enter the bloggers
It turned out that someone else had spotted the typo too. Two days after we identified the issue, a commenter on the Climate Audit blog also pointed it out.
The website's author, Stephen McIntyre, proceeded to claim (incorrectly) that there were "fundamental issues" with the study. It was the start of a concerted smear campaign aimed at discrediting our science.
As well as being discussed by bloggers (sometimes with a deeply offensive and sexist tone), the "flaw" was seized upon by sections of the mainstream media.
Meanwhile, our team received a flurry of hate mail and an onslaught of time-consuming Freedom of Information requests for access to our raw data and years of our emails, in search of ammunition to undermine and discredit our team and results. This is part of a range of tactics used in Australia and overseas in an attempt to intimidate scientists and derail our efforts to do our job.
Bloggers began to accuse us of conspiring to reverse-engineer our results to dramatise the warming in our region. Former geologist and prominent climate change sceptic Bob Carter published an opinion piece in The Australian claiming that the peer-review process is faulty and climate science cannot be trusted.

Checking the facts
Meanwhile, we set about rigorously checking and rechecking every step of our study in a bid to dispel any doubts about its accuracy. This included extensive reprocessing of the data using independently generated computer code, three additional statistical methods, detrended and non-detrended approaches, and climate model data to further verify the results.
The mammoth process involved three extra rounds of peer-review and four new peer-reviewers. From the original submission on 3 November, 2011, to the paper's re-acceptance on 26 April, 2016, the manuscript was reviewed by seven reviewers and two editors, underwent nine rounds of revisions, and was assessed a total of 21 times – not to mention the countless rounds of internal revisions made by our research team and data contributors. One reviewer even commented that we had done "a commendable, perhaps bordering on an insane, amount of work".
Finally, today, we publish our study again with virtually the same conclusion: the recent temperatures experienced over the past three decades in Australia, New Zealand and surrounding oceans are warmer than any other 30-year period over the past 1,000 years.
Our updated analysis also gives extra confidence in our results. For example, as the graph below shows, there were some 30-year periods in our palaeoclimate reconstructions during the 12th century that may have been fractionally (0.03–0.04℃) warmer than the 1961–1990 average. But these results are more uncertain as they are based on sparse network of only two records – and in any event, they are still about 0.3℃ cooler than the most recent 1985–2014 average recorded by our most accurate instrumental climate network available for the region.

Comparison of Australasian temperature reconstructions. Red: original temperature reconstruction published in the May 2012 version of the study; green: more recent reconstruction published in Nature Geoscience in April 2013; black: newly published reconstruction; orange: observed instrumental temperatures. Grey shading shows 90% uncertainty estimates of the original 2012 reconstruction; purple shading shows considerably expanded uncertainty estimates of the revised 2016 version based on four statistical methods. The recent 30-year warming (orange line) lies outside the range of temperature variability reconstruction (black line) over the past 1,000 years.
Overall, we are confident that observed temperatures in Australasia have been warmer in the past 30 years than every other 30-year period over the entire millennium (90% confidence based on 12,000 reconstructions, developed using four independent statistical methods and three different data subsets). Importantly, the climate modelling component of our study also shows that only human-caused greenhouse emissions can explain the recent warming recorded in our region.
Our study now joins the vast body of evidence showing that our region, in line with the rest of the planet, has warmed rapidly since 1950, with all the impacts that climate change brings. So far in 2016 we have seen bushfires ravage Tasmania's ancient World Heritage rainforests, while 93% of the Great Barrier Reef has suffered bleaching amid Australia's hottest ever sea temperatures – an event made 175 times more likely by climate change. Worldwide, it has never been hotter in our recorded history.

Speed vs accuracy
There are a couple of lessons we can take away from this ordeal. The first is that it takes far more time and effort to do rigorous science than it does to attack it.
In contrast to the instant gratification of publishing a blog post, the scientific process often takes years of meticulous evaluation and independent expert assessment.
Yes, we made a mistake – a single word in a 74-page document. We used the word "detrended" instead of "non-detrended". Atoning for this error involved spending four extra years on the study, while withstanding a withering barrage of brutal criticism.
This brings us to the second take-home message. Viciously attacking a researcher at one of Australia's leading universities as a "bimbo" and a "brain-dead retard" doesn't do much to encourage professional climate scientists to engage with the scores of online amateur enthusiasts. Worse still, gender-based attacks may discourage women from engaging in public debate or pursuing careers in male-dominated careers like science at all.
Although climate change deniers are desperate to be taken seriously by the scientific community, it's extremely difficult to engage with people who do not display the basic principles of common courtesy, let alone comply with the standard scientific practice of submitting your work to be scrutinised by the world's leading experts in the field.
Despite the smears, a rummage through hundreds of our emails revealed nothing but a group of colleagues doing their best to resolve an honest mistake under duress. It wasn't the guilty retreat from a flawed study produced by radical climate activists that the bloggers would have people believe. Instead, it showed the self-correcting nature of science and the steadfast dedication of researchers to work painstakingly around the clock to produce the best science humanly possible.
Rather than take the easy way out, we chose to withdraw our paper and spent years triple-checking every step of our work. After the exhaustive checking, the paper has been published with essentially the same conclusions as before, but now with more confidence in our results.
Like it or not, our story simply highlights the slow and unglamorous process of real science in action. In the end, this saga will be remembered as a footnote in climate science, a storm in a teacup, all played out against the backdrop of a planet that has never been hotter in human history.

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Climate Change: Tropical Heatwave Wipes Out Ocean Forests Off WA

The Australian - Victoria Laurie

Rocky reefs in Kalbarri in 2005, and in 2013 after a heatwave wiped out extensive underwater forests of kelp. Picture: T. Wernberg
Kelp forests off the coast of Western Australia have been wiped out by a heatwave, providing a strong warning of what the future might be like for Australia's temperate marine environment.
A team of marine scientists led by The University of Western Australia uncovered the extinction along 100km of Western ­Australia's coastline following a heatwave in 2011.
Kelp forests in the state's southern coastal waters, which contain huge diversity in seaweed species, have not experienced a heatwave of this significance ­before.
Lead author Thomas Wernberg from the UWA's Oceans Insti­tute and School of Plant ­Biology said the heatwave had ­followed decades of ocean warming, and the kelp forest showed no signs of recovery five years later.
"Temperatures exceeded anything previously experienced by these kelp forests and they collapsed, allowing turf algae, tropical and subtropical fish, seaweed and coral to increase rapidly," Professor Wernberg said.
The appearance of turf seaweeds and grazing fishes now prevented the return of kelp forests, he said, leading to a fundamental change in the coastal ecosystem. "Five years after the heatwave, many cool water fishes, seaweeds and invertebrates have disappeared and been replaced by reef communities from more typical tropical regions."
Professor Wernberg said the kelp forests were a key element of the ecosystem, like trees in a forest or corals on a coral reef.
"Kelp forests are the biological engine of Australia's Great Southern Reef, where they support ­globally unique temperate marine biodiversity, some of the most valuable fisheries in Australia and reef-related tourism worth over $10 billion per year," he said.
Co-lead author Dr Scott ­Bennett, from the Spanish ­Research Council, said tropical grazing fish were seen only rarely in the region before the heatwave, but had proliferated.
"The impact has been particularly prominent at northern reefs, where kelp forests have disappeared completely," he said.
"Recovery is unlikely because of the large grazing pressure, continued warming and like­lihood of more heatwaves in the future."
The research team, including scientists from CSIRO, WA Museum and overseas ­researchers, analysed data collected between 2001 and 2015 along 2000km of the West Australian coast.

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'Shocking Images' Reveal Death Of 10,000 Hectares Of Mangroves Across Northern Australia

ABC NewsKate Wild

A sea of dead mangroves
The scale of the mangrove death is considered unprecedented. (Bluebottle Films: James Sherwood)
Key points:
  • A mangrove expert says it is the most extreme "dieback" he has ever seen
  • The mangrove death occurred across a 700km stretch of NT and QLD
  • An expert believes it is linked to climate change
Close to 10,000 hectares of mangroves have died across a stretch of coastline reaching from Queensland to the Northern Territory.
International mangroves expert Dr Norm Duke said he had no doubt the "dieback" was related to climate change.
"It's a world-first in terms of the scale of mangrove that have died," he told the ABC.
Dr Duke flew 200 kilometres between the mouths of the Roper and McArthur Rivers in the Northern Territory last month to survey the extent of the dieback.
He described the scene as the most "dramatic, pronounced extreme level of dieback that I've ever observed".
Dead mangroves in northern Australia
Researchers flew over the affected area to gauge to scale of mangrove death. (Supplied: Norm Duke)
Dr Duke is a world expert in mangrove classification and ecosystems, based at James Cook University, and in May received photographs showing vast areas of dead mangroves in the Northern Territory section of the Gulf of Carpentaria.Until that time he and other scientists had been focused on mangrove dieback around Karmuba, Queensland, at the opposite end of the Gulf. "The images were compelling. They were really dramatic, showing severe dieback of mangrove shoreline fringing — areas just extending off into infinity," Dr Duke said.
"Certainly nothing in my experience had prepared me to see images like that."
Mangrove expert Norm Duke
Dr Duke described the dying off of mangroves as extreme. (Supplied: Norm Duke)
Dr Duke said he wanted to discover if the dieback in the two states was related.
"We're talking about 700 kilometres of distance between incidences at that early time," he said.
The area the Northern Territory photos were taken in was so remote the only way to confirm the extent and timing of the mangrove dieback was with specialist satellite imagery.
Aerial of the devastated mangroves

With careful analysis the imagery confirmed the mangrove dieback in both states had happened in the space of a month late last year, coincident with coral bleaching on the Great Barrier Reef.
"We're talking about 10,000 hectares of mangroves were lost across this whole 700 kilometre span," Dr Duke said.
It's not only unprecedented, it's extensive, it's severe and it's noticeable.
"I have not seen such imagery anywhere before, from all over the world. I work in many places around the world and I look at damaged mangroves as part of my work all the time. These are the most shocking images of dieback I've ever seen."
Dr Duke flew to the Northern Territory in June to judge the physical extent of the mangroves' damage.
With the support of the NT Parks and Wildlife Commission he flew in a helicopter between the mouths of the Roper and McArthur Rivers.

What is causing the 'dieback'?
Map: The 700km stretch hit by the mangrove dieback
Dr Duke said the cause of such extensive damage was not immediately evident. "Like a large oil spill, like a cyclone or severe storm — none of those things had occurred in the region in recent times," he said.
"But in that mix of things that were going on at the same time we're starting to hear about coral bleaching ... [and] hot water on the east coast."
The coincident timing of coral bleaching on the Great Barrier Reef and the dieback of mangroves in the north led Dr Duke to look at climatic factors. "I started hearing that the wet season was missing from the Northern Territory over that time period," he said.
"The wet season was only one-month-long in the year before. Usually the wet season in the Northern Territory in that area is three or four months long," Dr Duke said.
He said he was convinced unusually low rainfall in the 2014 wet season and elevated temperatures led to the massive mangrove dieback.
He said a deadly lack of fresh water and increased water and atmospheric temperatures stressed the plants beyond their tolerance.
Satellite imagery pinpoints the damage to a period of around four weeks in September-October 2015.

Mangroves the 'ugly duckling'
Mangroves dying off in northern Australia
Dr Duke said mangroves deaths do not attract as much attention as coral bleaching. (Bluebottle Films: Danielle Ryan)
Dr Duke said many people saw mangroves as ugly.
"They don't look as pretty as coral reefs, so they don't get that attention," he said.
But the health of mangroves has a significant impact on the commercial and amateur fishing industry in Australia.
Mangroves are essential breeding grounds for fish stock including prawns, crabs and, in the north of Australia, fin fish such as barramundi.
Dr Duke said he had heard anecdotal reports of lower-than-usual fish catches in the area of the Northern Territory he surveyed in June.

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